Food Is Medicine

The Human Microbiome

Rob Knight: How our microbes make us who we are

Rob Knight is a pioneer in studying human microbes, the community of tiny single-cell organisms living inside our bodies that have a huge — and largely unexplored — role in our health. “The three pounds of microbes that you carry around with you might be more important than every single gene you carry around in your genome,” he says. 

The link between your gut health and autoimmune diseases.

Dr. Robynne Chutkan | Revitalize | Why The Microbiome Is The Future Of Medicine

We've all heard about the microbiome, but what is it? Why should we care? And, most importantly, what should we do about it? 


Katherine Pollard: "Massive Data Sheds Light on Your Microbiome" | Talks at Google

The most influential “organ” in the human body might be made up of foreign cells—six pounds worth of microorganisms. Katherine Pollard discusses how her lab at the Gladstone Institutes uses big data and high-performance computing to study the human microbiome and learn how it influences health and disease.

The human microbiome plays a role in processes as diverse as metabolism, immune function, and mental health. Yet despite the importance of this system, scientists are just beginning to uncover which microorganisms reside in and on our bodies and determine what functions they perform. The development of innovative technology and analytical methods has enabled researchers like Dr. Pollard to decode the complex interactions between our human cells and microbial brethren, and infer meaning from the staggering amounts of data 10 trillion organisms create.

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The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism. Short-chain fatty acids (SCFAs), the end products of fermentation of dietary fibers by the anaerobic intestinal microbiota, have been shown to exert multiple beneficial effects on mammalian energy metabolism. The mechanisms underlying these effects are the subject of intensive research and encompass the complex interplay between diet, gut microbiota, and host energy metabolism. This review summarizes the role of SCFAs in host energy metabolism, starting from the production by the gut microbiota to the uptake by the host and ending with the effects on host metabolism.

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The Effects of Stress and Meditation on the Immune System, Human Microbiota, and Epigenetics. Psychological stress typically triggers a fight-or-flight response, prompting corticotropin-releasing hormone and catecholamine production in various parts of the body, which ultimately disturbs the microbiota. In the absence of stress, a healthy microbiota produces short-chain fatty acids that exert anti-inflammatory and antitumor effects. During stress, an altered gut microbial population affects the regulation of neurotransmitters mediated by the microbiome and gut barrier function. Meditation helps regulate the stress response, thereby suppressing chronic inflammation states and maintaining a healthy gut-barrier function. The current research team recommends the integration of meditation into conventional health care and wellness models.

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Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans.

Our Microbiome - Health Matters

Foods that Heal and Foods that Kill. Dr. John Bergman


"Disease does not exist. It is the body adapting to deficiency or toxicity." Dr. John Bergman.


How to Work with the Immune System

The Healer Within - Our Microbiome

Human Body Microbes Make Antibiotics, Study Finds. Each of us has a microbiome which is a component of our 'healer within' and is a major beneficiary of Qigong practice. Our microbiome can be considered part of our internal "pharmacy" where we can get safe and natural personalized drugs. New microbiome pictureresearch, funded in part by NCCIH, suggests that some of the bacteria that share our human bodies manufacture antibiotics and that these substances may be capable of fighting infection. The researchers, from the University of California, San Francisco; the University of California, Santa Cruz; Indiana University; Washington University School of Medicine; and Harvard Medical School, published their findings in a recent issue of the journal Cell: 

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A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

Frontiers in Gut Microbiota & Cancer: Thomas Gajewski.

Immune system modulation for cancer treatment.  Holistically working with the micobiome and energy medicine is a large part of future of western medicine and will dominate in the latter 21st Century. Western medicine is just discovering the importance of the microbiome. Researchers are already finding connections between the immune response and disease. A major component of the body's immune response is generated by the microbiome. Autoimmune disorders (i.e. they can't figure it out so they use this term) are being traced to imbalances or dysfunction in the gut microbiome. He mentions the example of an incorrect mix (individualized for each person, just like holistic medicine) of microbiota species (e.g. bifidobacterium) leads to an incorrect or non-existent immune response (i.e. an "autoimmune disorder").

Note that the enteric nervous system which is the extension of the autonomic nervous system to and through the gut (i.e. it is the nervous system of the microbiota/gut) is connected to the central nervous system via the vagus nerve. Qigong directly affects the vagus nerve in a very positive way, and that's another reason why Qigong practice is so simple yet powerful.

The Human Microbiome, the Self You Never Knew

portraits facing each other

The Living Organisms Sharing Your Body

Can a basic understanding of the Human Microbiome change the way we think of ourselves and provide substantial food for thought as we reflect on who and what we are as a species?We know that we are made of bones, blood, cells, muscle, etc. and we tend to think that these are what makes us human. However, we often overlook the Human Microbiome. This is a naturally occurring community microorganisms (microbes) in our body – including diverse viruses, fungi, and protozoa – that outnumber human cells almost two to one! While this might sound scary, this thriving community of microbes in our body is working in harmony with our human cells to create life as we know it. More...

Gut bacteria and mind control: to fix your brain, fix your gut!

The Microbiome Diet: Populating Friendly Bacteria For Optimal Health – Saturday Strategy

Fermentation; How To Get Healthy Bacteria To Your System

Probing the Link Between Gut Microbial Imbalance and Multiple Sclerosis

Mounting evidence suggests a deep connection between the gut microbiota and central nervous system.1 A hypothesis with important clinical implications generated from this concept is that an imbalance in the gut microbial community can lead to immune dysregulation and, in turn, autoimmune disease, including such neuroinflammatory conditions as multiple sclerosis (MS).

"There is no drug more powerful than good nutrition."

Tom Rogers
President. Qigong Institute

Add These Fiber-Rich Foods to Your Diet to Fight Inflammation


Butyrate is a short-chain fatty acid. The richest source of butyrate is butter. But as it turns out, your intestinal cells fully rely on gut bacteria to produce butyrate. In fact, their very survival depends on it. Butyrate is an important source of energy for intestinal cells. Without butyrate—or with only a short supply—intestinal cells die. (1) This may explain why the highest concentration of butyrate in the human body is found in the gut. Butyrate does more than feed intestinal cells. It also controls inflammation.


How is Human Metabolism Controlled?

Metabolomics is the chemical fingerprint of your body. Your genome and genetic profile are simply a blueprint of the raw material or ingredients (proteins) of your body. The blueprint does not give an idea of how the (expressed) genes interact and how the environment affects the genes. Metabolomics is concerned with what is occurring in your body moment to moment (the set of active metabolites) as a result of factors such as nutrition and lifestyle with the ultimate goal of understanding how metabolism is regulated and identifying the metaboloic signatures of disease.

The gut microbiome is the body's main generator of metabolites. One main way that Qigong practice positively affects the microbiome is via stress reduction.

Exploring the Gut Microbiome’s Connection to Human Behavior – Lecture by Dr. John Cryan. A healthy life-style (in Daoist terms, Yang Sheng) includes the mind-body practice of Qigong, western-style exercise, proper nutrition, and healthy living habits. One of the most important notions in living a healthy life-style is understanding the key relationship between the gut microbiome and health. John F. Cryan, Ph.D., Professor and Chair of the Department of Anatomy and Neuroscience at University College Cork, in Ireland, gave a lecture, “Towards Psychobiotics: The Microbiome as a Key Regulator of Brain and Behavior,” as part of the National Center for Complementary and Integrative Health’s (NCCIH) Integrative Medicine Research Lecture Series. Dr. Cryan is an internationally recognized scientist in the exciting area of the interactions between gut microbes and the brain. He works closely with gastroenterologists, microbiologists, ecologists, and behavioral scientists in studying the various interactions and biological effects of the gut microbiome on human behavior. One way that the practice of Qigong directly affects the gut microbiome is through the reduction of stress.

It's a Gut Feeling - how the gut microbiota affects the state of mind. The gut microbiota is a dynamic and diverse ecosystem and forms a symbiotic relationship with the host. This research describes the components of the gut microbiota and mechanisms by which it can influence neural development, complex behaviours and nociception. Furthermore, the authors propose the novel concept of a "state of gut" rather than a state of mind.

Biological Magnetic Resonance Data Bank. A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules.

How to Increase Probiotics in Your Diet

Immunity Solution by Dr. Joel Fuhrman


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